bioinformatics

Mitochondria

4 minute read

Scattered info on the mitochondrial genome

Amplification Bias

2 minute read

See Calibrating genomic and allelic coverage… by Zhang, et. al.

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math

tSNE animation

less than 1 minute read

animation of tsne on 2500 MNIST digits

Math Test

less than 1 minute read

As the following beautiful equation shows, I can now render TeX in this site:

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python

Check of automatic differentiation

1 minute read

code that verifies that pytorch automatically computed gradient from KL divergence agrees with the formula in the tSNE paper.

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mathematics

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machine-learning

Check of automatic differentiation

1 minute read

code that verifies that pytorch automatically computed gradient from KL divergence agrees with the formula in the tSNE paper.

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clustering

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mitochondria

Mitochondria

4 minute read

Scattered info on the mitochondrial genome

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music

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rna-seq

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bayesian

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tsne

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