Estimating genotypes and testing HWE from sequences
Continuing discussion of the Li paper Inference using sequencing data…
Recent Posts
Genotyping from sequence data
Reading H. Li, Inference using sequencing data… Bioinformatics 2011.
Samtools and Pysam
Reconciling output from samtools mpileup and pysam mpileup
The mem in bwa and what it means
MEM means Maximal Exact Match – and it can trip you up.
More mitochondrial links
References to look into later